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Just Cause 2

Valkyrie Profile.

Definetely Quantum Conundrum

deus ex hr

Deus ex series for sure

Sleeping dogs probably. Amazing game, it don't suck unlike GTA4. finished it 2 times.
Another great SE game is tomb raider. Closest game to uncharted PC has.
Most of SE games are good. It's a nice company making nice games with good prices. Period.

Quantum Conundrum :D

Tomb Raider for now, probably.

Dragon Warrior Monsters 2

I have a bunch of their PC games but haven't gotten around to playing them yet.

I liked FF4,6,7, and 9, Sleeping Dogs, a lot of eidos games that they acquired (hitman, Just cause, Deus Ex, and Legacy of Kain), but I'd have to say my favorite is Xenogears.
Hitman Absolution, Deus Ex: The Fall, Kingdom Hearts (any of em really), FF8,10 (moreso 10-2 but i wasn't a big fan of 10),13, and Secret of mana are all not very good IMO.

Sleeping Dogs!!

Final Fantasy X

Vagrant Story
Probably the best game I've ever played and it still holds up to this day.

1.Chrono Trigger
2.Chrono Trigger
3.Chrono Trigger

Kingdom Hearts all the way

Soul Blazer. And yeah, I know that it was developed by another company, and Square Enix was still just Enix.
I just don't care.

Final Fantasy 2-4/6/7, Dragon Quest 3 & 9, Chrono Trigger, and the Tactics Ogre games.

Tomb Raider

Tomb Raider, Sleeping Dogs and Hitman series.

Bravely Default xD

Kingdom Hearts.

Deux Ex: Human Revolution