Favourite Game from Indie Bundle and Best Overall Bundle?

Dungeons of dredmor :D
First one that came to mind at least.
Edit : Just thought of Binding of Isaac and Sanctum , I bet it's so many more that I can't remember at the moment.

World of Goo :D

I've missed HiB4 with Jamestown, but I have enjoyed Trine quite a bit :)

World of Goo!

Hmm hard to say, haven't played through the majority of them yet. I will say And Yet It Moves has been the biggest surprise I've played yet. Looked at it before it was in the bundle and I was so up in the air about it, then when I got it and actually tried it I really enjoyed it. I guess in retrospect it isn't that surprising since I love platformers, though.

Shank, Blocks That Matter, World Of Goo, Super Meat Boy. One of those 4

hmmm my most favorite is Super Meat Boy i guess since its one of the ones ive mostly played.

super meat boy

Tough question, because there are so many bundles with so many great games. The one that I have played the most of that was part of a bundle is Super Meat Boy, but my favorite is a tie between Super Meat Boy and VVVVVV.

Binding of Isaac / Trine / VVVVVV / Beat Hazard
Don't make me choose

The Binding of Isaac, Super Meat Boy, World of Goo, Shank

Unfortunately I have gotten only a few of the games I have actually liked from bundles. But Killing Floor most, most definitely as it is on the Be Mine 2 -bundle. Also really awesome games such as Revenge of the Titans, Nuclear Dawn, Super Meat Boy.

Cave Story+

There are lots of good games, but that one sticks out the most.

The Binding of Isaac (played the hell out of it)
Jamestown
Dungeons of Dredmor
Cave Story+

Braid, Super Meat Boy, Trine, Machinarium, VVVVVV and Beat Hazard are also awesome, but I had them already.

I haven't gotten a chance to play through most of my bundle games yet, but a couple I loved were Machinarium and Osmos. They were very pleasant surprises and I had a lot of fun with them.

According to my Steam playtime, that would be Fortix 2. However, there are many games from those bundle that I have yet to play.

Super Meat Boy!! Ever!!!! :D

Braid, Shank and Trine

Braid by far.

Then Trine, Binding of Isaac, World of Goo, Dungeons of Dredmor.

Cave Story+

Cave Story+ and The Binding of Isaac.
I think I bought BoI separately though...oh and Sanctum even though I didn't buy the bundle.

shank, sideway

World of Goo.